Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-carboxymuconolactone decarboxylase | DWX60_01125 | Not Available | Positive | 294666 - 295496 | 31073.9 |
| hypothetical protein | DWX60_01130 | Not Available | Positive | 295631 - 296845 | 45675.3 |
| phosphoglycerate kinase | DWX60_01135 | Not Available | Negative | 296920 - 298173 | 44034.9 |
| fecr family protein | DWX60_01140 | Not Available | Positive | 298397 - 299323 | 35762.9 |
| susc/raga family tonb-linked outer membrane protein | DWX60_01145 | Not Available | Positive | 299475 - 302891 | 125439.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWX60_01150 | Not Available | Positive | 302910 - 304523 | 60320.1 |
| dicarboxylate/amino acid:cation symporter | DWX60_01155 | Not Available | Positive | 304759 - 305940 | 42267.4 |
| hypothetical protein | DWX60_01160 | Not Available | Positive | 306050 - 307540 | 55805.3 |
| hypothetical protein | DWX60_01165 | Not Available | Positive | 307552 - 308112 | 21343.8 |
| ahpc/tsa family protein | DWX60_01170 | Not Available | Negative | 308212 - 309207 | 37139.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

