Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | DWX60_10940 | Not Available | Positive | 2685244 - 2686134 | 32692.7 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DWX60_10945 | Not Available | Negative | 2686185 - 2686667 | 17475.2 |
| faa hydrolase family protein | DWX60_10950 | Not Available | Negative | 2686664 - 2687281 | 23340.1 |
| redox-sensing transcriptional repressor rex | DWX60_10955 | Not Available | Negative | 2687286 - 2687936 | 24251.6 |
| translation initiation factor | DWX60_10960 | Not Available | Positive | 2688054 - 2688392 | 12663.2 |
| elongation factor ts | DWX60_10965 | Not Available | Negative | 2688451 - 2689440 | 35504.8 |
| 30s ribosomal protein s2 | DWX60_10970 | Not Available | Negative | 2689573 - 2690412 | 30564.9 |
| 30s ribosomal protein s9 | DWX60_10975 | Not Available | Negative | 2690545 - 2690931 | 14527.7 |
| 50s ribosomal protein l13 | DWX60_10980 | Not Available | Negative | 2690938 - 2691399 | 17129.7 |
| hypothetical protein | DWX60_10985 | Not Available | Negative | 2691699 - 2691944 | 9041.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

