Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna processing protein rimm | DWX60_10890 | Not Available | Negative | 2678007 - 2678525 | 19831.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DWX60_10895 | Not Available | Negative | 2678537 - 2679841 | 47644.1 |
| duf4290 domain-containing protein | DWX60_10900 | Not Available | Negative | 2679860 - 2680486 | 24903.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DWX60_10905 | Not Available | Negative | 2680533 - 2681222 | 25285.7 |
| yicc family protein | DWX60_10910 | Not Available | Positive | 2681318 - 2682193 | 33867.7 |
| guanylate kinase | DWX60_10915 | Not Available | Positive | 2682240 - 2682809 | 21367.4 |
| hypothetical protein | DWX60_10920 | Not Available | Positive | 2682814 - 2682996 | 6793.87 |
| nicotinate-nucleotide adenylyltransferase | DWX60_10925 | Not Available | Positive | 2682978 - 2683550 | 22162.7 |
| duf3836 domain-containing protein | DWX60_10930 | Not Available | Negative | 2683633 - 2684103 | 18198.9 |
| metallophosphoesterase | DWX60_10935 | Not Available | Negative | 2684331 - 2685170 | 31352.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

