Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate dehydrogenase | DWX60_10840 | Not Available | Negative | 2666225 - 2667124 | 32291.9 |
| holliday junction branch migration protein ruva | DWX60_10845 | Not Available | Positive | 2667300 - 2667893 | 21141.8 |
| hypothetical protein | DWX60_10850 | Not Available | Negative | 2667981 - 2668805 | 30836.1 |
| hdig domain-containing protein | DWX60_10855 | Not Available | Positive | 2668823 - 2670325 | 57599.9 |
| hemolysin iii | DWX60_10860 | Not Available | Positive | 2670330 - 2670965 | 23650.2 |
| anaerobic ribonucleoside triphosphate reductase | DWX60_10865 | Not Available | Positive | 2671260 - 2673536 | 86287.2 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DWX60_10870 | Not Available | Positive | 2673542 - 2674000 | 17410.7 |
| rip metalloprotease rsep | DWX60_10875 | Not Available | Negative | 2674575 - 2675918 | 50887.1 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DWX60_10880 | Not Available | Negative | 2675975 - 2677123 | 42392.3 |
| m23 family peptidase | DWX60_10885 | Not Available | Negative | 2677131 - 2677988 | 32093.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

