Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| port family protein | DWX60_10690 | Not Available | Negative | 2631058 - 2631663 | 21310.4 |
| porin family protein | DWX60_10695 | Not Available | Negative | 2631867 - 2632403 | 19622.1 |
| hypothetical protein | DWX60_10700 | Not Available | Negative | 2632608 - 2632799 | 6973.57 |
| m23 family peptidase | DWX60_10705 | Not Available | Negative | 2632803 - 2633426 | 22827.6 |
| hypothetical protein | DWX60_10710 | Not Available | Negative | 2633436 - 2634095 | 24397.2 |
| peptidoglycan editing factor pgef | DWX60_10715 | Not Available | Negative | 2634135 - 2634917 | 28811.3 |
| gtpase obge | DWX60_10720 | Not Available | Negative | 2634914 - 2636098 | 44180.3 |
| adenylate kinase | DWX60_10725 | Not Available | Negative | 2636214 - 2636783 | 20885.2 |
| hypoxanthine phosphoribosyltransferase | DWX60_10730 | Not Available | Negative | 2636824 - 2637360 | 20092.5 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | DWX60_10735 | Not Available | Positive | 2637480 - 2639015 | 56235.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

