Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DWX60_10640 | Not Available | Positive | 2613727 - 2615496 | 68802.7 |
| sigma-54-dependent fis family transcriptional regulator | DWX60_10645 | Not Available | Positive | 2615533 - 2616873 | 50138.7 |
| atp-binding protein | DWX60_10650 | Not Available | Positive | 2616989 - 2618290 | 49000.9 |
| atp-dependent helicase | DWX60_10655 | Not Available | Positive | 2618371 - 2621547 | 122650.0 |
| pd-(d/e)xk nuclease family protein | DWX60_10660 | Not Available | Positive | 2621547 - 2624426 | 110969.0 |
| 4-diphosphocytidyl-2c-methyl-d-erythritol kinase | DWX60_10665 | Not Available | Negative | 2624501 - 2625328 | 30681.1 |
| replicative dna helicase | DWX60_10670 | Not Available | Positive | 2625590 - 2627146 | 57459.0 |
| phenylalanine--trna ligase subunit beta | DWX60_10675 | Not Available | Positive | 2627300 - 2629762 | 91197.9 |
| yebc/pmpr family dna-binding transcriptional regulator | DWX60_10680 | Not Available | Positive | 2629796 - 2630536 | 27834.7 |
| tigr03905 family tscpd domain-containing protein | DWX60_10685 | Not Available | Positive | 2630538 - 2630783 | 9080.04 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

