Phocaeicola vulgatus strain AF20-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF20-10 is a Gram-positive, anaerobic bacterium characterized by its rod shape and single-cell arrangement. This strain is mesophilic, indicating it thrives in moderate temperature ranges. It is non-motile, despite having flagella, which are typically associated with mobility in bacteria. Phocaeicola vulgatus is free-living and has been identified in association with Homo sapiens, suggesting a potential role in the human microbiome. The bacterium possesses a unique cellular structure, featuring two membranes and a single replicon, which may influence its adaptability and survival in various environments. The presence of two membranes is typical for Gram-positive organisms, which could play a part in its interactions with the host and its surrounding environment. This strain's habitat is specifically host-associated, highlighting its ecological role within the human body. The relationship between P. vulgatus and its human hosts could provide insights into the complex dynamics of the gut microbiota, where such bacteria may contribute to metabolic processes or immune responses. Understanding the characteristics and behaviors of Phocaeicola vulgatus strain AF20-10 could be pivotal in exploring its potential implications in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF20-10

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF20-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF20-10 AF20-10.Scaf135, whole genome

Gene Summary

Adenine Count

1430907 bp

Thymine Count

1387512 bp

Guanine Count

978085 bp

Cytosine Count

1055327 bp

Genome Length

4853285 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aaa family atpaseDWX60_10640Not AvailablePositive2613727 - 261549668802.7
sigma-54-dependent fis family transcriptional regulatorDWX60_10645Not AvailablePositive2615533 - 261687350138.7
atp-binding proteinDWX60_10650Not AvailablePositive2616989 - 261829049000.9
atp-dependent helicaseDWX60_10655Not AvailablePositive2618371 - 2621547122650.0
pd-(d/e)xk nuclease family proteinDWX60_10660Not AvailablePositive2621547 - 2624426110969.0
4-diphosphocytidyl-2c-methyl-d-erythritol kinaseDWX60_10665Not AvailableNegative2624501 - 262532830681.1
replicative dna helicaseDWX60_10670Not AvailablePositive2625590 - 262714657459.0
phenylalanine--trna ligase subunit betaDWX60_10675Not AvailablePositive2627300 - 262976291197.9
yebc/pmpr family dna-binding transcriptional regulatorDWX60_10680Not AvailablePositive2629796 - 263053627834.7
tigr03905 family tscpd domain-containing proteinDWX60_10685Not AvailablePositive2630538 - 26307839080.04

Displaying genes 2061 – 2070 of 3918 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.