Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DWX60_10585 | Not Available | Negative | 2606760 - 2608310 | 59283.4 |
| hypothetical protein | DWX60_10590 | Not Available | Positive | 2608687 - 2608935 | 9428.5 |
| hypothetical protein | DWX60_10595 | Not Available | Negative | 2609090 - 2609473 | 14850.1 |
| upxy family transcription antiterminator | DWX60_10600 | Not Available | Negative | 2609556 - 2610104 | 21158.1 |
| duf2442 domain-containing protein | DWX60_10610 | Not Available | Negative | 2611098 - 2611514 | 16012.2 |
| duf3791 domain-containing protein | DWX60_10615 | Not Available | Positive | 2611825 - 2612253 | 15940.4 |
| duf3990 domain-containing protein | DWX60_10620 | Not Available | Positive | 2612250 - 2612723 | 18414.9 |
| hypothetical protein | DWX60_10625 | Not Available | Positive | 2612720 - 2612947 | 8602.18 |
| glutathione peroxidase | DWX60_10630 | Not Available | Negative | 2612978 - 2613517 | 20058.2 |
| hypothetical protein | DWX60_10635 | Not Available | Positive | 2613523 - 2613723 | 7870.84 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

