Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DWX60_10485 | Not Available | Positive | 2581883 - 2583739 | 68693.0 |
| hypothetical protein | DWX60_10490 | Not Available | Positive | 2584016 - 2584453 | 17481.4 |
| abc transporter permease | DWX60_10495 | Not Available | Negative | 2584514 - 2586841 | 87004.1 |
| abc transporter permease | DWX60_10500 | Not Available | Negative | 2586856 - 2589168 | 87547.2 |
| abc transporter atp-binding protein | DWX60_10505 | Not Available | Negative | 2589188 - 2589862 | 24853.2 |
| abc transporter permease | DWX60_10510 | Not Available | Negative | 2589897 - 2592206 | 86315.6 |
| m3 family peptidase | DWX60_10515 | Not Available | Positive | 2592528 - 2594633 | 79223.1 |
| acyltransferase | DWX60_10520 | Not Available | Positive | 2594814 - 2595974 | 44315.1 |
| hypothetical protein | DWX60_10525 | Not Available | Negative | 2596081 - 2596935 | 31760.9 |
| hypothetical protein | DWX60_10530 | Not Available | Positive | 2596942 - 2597172 | 9075.28 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

