Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimeric intracellular cation channel family protein | DWX60_10435 | Not Available | Negative | 2565972 - 2566586 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DWX60_10440 | Not Available | Positive | 2566670 - 2567758 | 40189.8 |
| duf3078 domain-containing protein | DWX60_10445 | Not Available | Negative | 2567859 - 2569253 | 53456.6 |
| ctp synthase | DWX60_10450 | Not Available | Positive | 2569463 - 2571061 | 60081.3 |
| membrane protein insertase yidc | DWX60_10455 | Not Available | Positive | 2571101 - 2572966 | 70945.9 |
| hypothetical protein | DWX60_10460 | Not Available | Negative | 2572896 - 2573129 | 8734.26 |
| s9 family peptidase | DWX60_10465 | Not Available | Positive | 2573194 - 2575314 | 79850.9 |
| rlua family pseudouridine synthase | DWX60_10470 | Not Available | Negative | 2576433 - 2577359 | 35718.2 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DWX60_10475 | Not Available | Negative | 2577404 - 2578825 | 54000.1 |
| pyruvate, phosphate dikinase | DWX60_10480 | Not Available | Positive | 2579024 - 2581750 | 100098.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

