Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate carbamoyltransferase regulatory subunit | DWX60_10385 | Not Available | Positive | 2555885 - 2556352 | 17408.3 |
| flavin reductase family protein | DWX60_10390 | Not Available | Positive | 2556358 - 2556945 | 21914.5 |
| port family protein | DWX60_10395 | Not Available | Positive | 2556955 - 2557674 | 27382.5 |
| serine hydroxymethyltransferase | DWX60_10400 | Not Available | Positive | 2557921 - 2559201 | 46829.6 |
| mate family efflux transporter | DWX60_10405 | Not Available | Positive | 2559400 - 2560743 | 49320.3 |
| ompa family protein | DWX60_10410 | Not Available | Positive | 2560792 - 2561511 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DWX60_10415 | Not Available | Positive | 2561641 - 2562363 | 27910.3 |
| duf1460 domain-containing protein | DWX60_10420 | Not Available | Negative | 2562335 - 2563219 | 33329.6 |
| biotin/lipoyl-binding protein | DWX60_10425 | Not Available | Negative | 2563345 - 2565120 | 66738.8 |
| rna polymerase sigma factor | DWX60_10430 | Not Available | Negative | 2565310 - 2565813 | 19667.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

