Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DWX60_10285 | Not Available | Positive | 2535339 - 2536046 | 26403.7 |
| nlpc/p60 family protein | DWX60_10290 | Not Available | Positive | 2536043 - 2536555 | 19418.5 |
| had family hydrolase | DWX60_10295 | Not Available | Positive | 2536611 - 2538680 | 79678.2 |
| 50s ribosomal protein l21 | DWX60_10300 | Not Available | Positive | 2538894 - 2539211 | 11743.4 |
| 50s ribosomal protein l27 | DWX60_10305 | Not Available | Positive | 2539233 - 2539496 | 9251.19 |
| thiamine diphosphokinase | DWX60_10310 | Not Available | Negative | 2539553 - 2540188 | 23777.5 |
| nicotinamide riboside transporter pnuc | DWX60_10315 | Not Available | Negative | 2540175 - 2540747 | 22114.5 |
| serine--trna ligase | DWX60_10320 | Not Available | Positive | 2540867 - 2542141 | 47884.3 |
| mfs transporter | DWX60_10325 | Not Available | Positive | 2542282 - 2543499 | 43404.6 |
| bifunctional dihydroorotate dehydrogenase b nad binding subunit/nadph-dependent glutamate synthase | DWX60_10330 | Not Available | Positive | 2543682 - 2545979 | 82907.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

