Phocaeicola vulgatus strain AF20-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF20-10 is a Gram-positive, rod-shaped bacterium that typically exists in a single-cell arrangement and is classified as an anaerobe, indicating its ability to thrive in environments devoid of oxygen. This strain is host-associated, suggesting a specific ecological relationship with its host organism, although the nature of this association is not detailed in the provided data. The Gram-positive characteristic of P. vulgatus AF20-10 implies a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in anaerobic conditions. The rod shape is a common morphological feature within its genus, potentially facilitating its survival and colonization within the host environment. The anaerobic nature of P. vulgatus AF20-10 underscores its adaptation to niches where oxygen is limited, possibly indicating a role in fermentation processes or other metabolic pathways that occur in anaerobic ecosystems. This trait may also suggest that the bacterium plays a role in the breakdown of complex organic materials, contributing to nutrient cycling within the host environment. Understanding the specific ecological role of P. vulgatus strain AF20-10 may provide insights into its potential contributions to the microbiome of its host, particularly in terms of metabolic interactions and overall host health. Further studies could elucidate its functional impacts on the host's physiology and the broader implications for microbial diversity in host-associated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF20-10
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF20-10

Accession NumberQRWE00000000.1

Gene Summary

Adenine Count

1430907 bp

Thymine Count

1387512 bp

Guanine Count

978085 bp

Cytosine Count

1055327 bp

Genome Length

4853285 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
arac family transcriptional regulatorDWX60_00050Not Available+9233 - 1009333239.9
succinate dehydrogenase/fumarate reductase iron-sulfur subunitDWX60_00055Not Available-10158 - 1091327308.1
fumarate reductase/succinate dehydrogenase flavoprotein subunitDWX60_00060Not Available-10934 - 1289272651.5
succinate dehydrogenase/fumarate reductase cytochrome b subunitDWX60_00065Not Available-12927 - 1361325487.5
phosphatase pap2 family proteinDWX60_00070Not Available+13804 - 1441522003.9
s41 family peptidaseDWX60_00075Not Available-14519 - 1612060827.7
phosphopantetheine adenylyltransferaseDWX60_00080Not Available-16123 - 1657817350.0
type iia dna topoisomerase subunit bDWX60_00085Not Available-16596 - 1847371021.8
n-acetyltransferaseDWX60_00090Not Available-18504 - 1964043785.1
sodium:calcium antiporterDWX60_00095Not Available-19715 - 2067733562.8

Displaying genes 11 – 20 of 3918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites