Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter outer membrane beta-barrel domain-containing protein | DWX60_10235 | Not Available | Positive | 2521642 - 2522880 | 47426.2 |
| class i sam-dependent methyltransferase | DWX60_10240 | Not Available | Positive | 2522936 - 2523724 | 30817.0 |
| class i sam-dependent rrna methyltransferase | DWX60_10245 | Not Available | Negative | 2524377 - 2525561 | 44449.1 |
| 3'-5' exonuclease domain-containing protein 2 | DWX60_10250 | Not Available | Negative | 2525551 - 2526201 | 24607.5 |
| duf5063 domain-containing protein | DWX60_10255 | Not Available | Negative | 2526198 - 2526761 | 21633.7 |
| dna translocase ftsk | DWX60_10260 | Not Available | Positive | 2526866 - 2529331 | 91840.0 |
| hypothetical protein | DWX60_10265 | Not Available | Positive | 2529348 - 2529962 | 22975.4 |
| thioredoxin-disulfide reductase | DWX60_10270 | Not Available | Positive | 2530032 - 2530979 | 34005.6 |
| insulinase family protein | DWX60_10275 | Not Available | Positive | 2531010 - 2533829 | 106190.0 |
| hypothetical protein | DWX60_10280 | Not Available | Positive | 2533839 - 2535326 | 57522.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

