Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acrb/acrd/acrf family protein | DWX60_10130 | Not Available | Positive | 2499329 - 2502388 | 112957.0 |
| tolc family protein | DWX60_10135 | Not Available | Positive | 2502375 - 2503664 | 48558.9 |
| histidine kinase | DWX60_10140 | Not Available | Positive | 2503805 - 2504833 | 39021.8 |
| dna-binding response regulator | DWX60_10145 | Not Available | Positive | 2504826 - 2505599 | 29809.8 |
| hypothetical protein | DWX60_10150 | Not Available | Negative | 2505628 - 2505900 | 10520.9 |
| aldehyde dehydrogenase family protein | DWX60_10155 | Not Available | Negative | 2506152 - 2509472 | 124002.0 |
| hypothetical protein | DWX60_10160 | Not Available | Negative | 2509843 - 2510448 | 23278.7 |
| hypothetical protein | DWX60_10165 | Not Available | Positive | 2510635 - 2510820 | 7314.11 |
| yjbq family protein | DWX60_10170 | Not Available | Negative | 2510850 - 2511263 | 15533.7 |
| abc transporter permease | DWX60_10175 | Not Available | Negative | 2511272 - 2512474 | 44901.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

