Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| large conductance mechanosensitive channel protein mscl | DWX60_10080 | Not Available | Positive | 2486402 - 2486842 | 15733.6 |
| gmp synthase (glutamine-hydrolyzing) | DWX60_10085 | Not Available | Positive | 2487077 - 2488630 | 57645.2 |
| glutamine-hydrolyzing gmp synthase | DWX60_10090 | Not Available | Positive | 2488669 - 2489976 | 48297.4 |
| aminopeptidase p family protein | DWX60_10095 | Not Available | Negative | 2490133 - 2491293 | 42418.8 |
| hypothetical protein | DWX60_10100 | Not Available | Positive | 2491410 - 2491832 | 16008.7 |
| efflux rnd transporter periplasmic adaptor subunit | DWX60_10105 | Not Available | Positive | 2491955 - 2493106 | 43842.3 |
| acrb/acrd/acrf family protein | DWX60_10110 | Not Available | Positive | 2493119 - 2496268 | 115678.0 |
| tolc family protein | DWX60_10115 | Not Available | Positive | 2496246 - 2497703 | 54863.0 |
| glsb/yeaq/ymge family stress response membrane protein | DWX60_10120 | Not Available | Negative | 2497792 - 2498043 | 8688.23 |
| efflux rnd transporter periplasmic adaptor subunit | DWX60_10125 | Not Available | Positive | 2498283 - 2499308 | 38028.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

