Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enolase | DWX60_09875 | Not Available | Negative | 2435770 - 2437065 | 46741.8 |
| glycoside hydrolase family 95 protein | DWX60_09880 | Not Available | Positive | 2437231 - 2439675 | 92069.8 |
| glycoside hydrolase family 88 protein | DWX60_09885 | Not Available | Positive | 2439724 - 2440923 | 45343.0 |
| duf4038 domain-containing protein | DWX60_09890 | Not Available | Positive | 2441074 - 2442543 | 56339.4 |
| alpha-rhamnosidase | DWX60_09895 | Not Available | Positive | 2442549 - 2446523 | 149825.0 |
| glycoside hydrolase family 127 protein | DWX60_09900 | Not Available | Positive | 2446750 - 2448855 | 78760.8 |
| right-handed parallel beta-helix repeat-containing protein | DWX60_09905 | Not Available | Positive | 2448880 - 2450703 | 68585.1 |
| alpha-rhamnosidase | DWX60_09910 | Not Available | Positive | 2450718 - 2452862 | 82036.8 |
| hypothetical protein | DWX60_09915 | Not Available | Negative | 2453025 - 2453453 | 16939.3 |
| mannose-1-phosphate guanylyltransferase | DWX60_09920 | Not Available | Negative | 2453457 - 2454500 | 39471.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

