Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6,7-dimethyl-8-ribityllumazine synthase | DWX60_09770 | Not Available | Negative | 2416725 - 2417231 | 18128.7 |
| hypothetical protein | DWX60_09775 | Not Available | Negative | 2417324 - 2418001 | 24504.2 |
| dna replication/repair protein recf | DWX60_09780 | Not Available | Positive | 2418154 - 2419269 | 42967.7 |
| duf721 domain-containing protein | DWX60_09785 | Not Available | Positive | 2419266 - 2419556 | 11221.9 |
| 5-formyltetrahydrofolate cyclo-ligase | DWX60_09790 | Not Available | Negative | 2419722 - 2420252 | 20494.6 |
| s41 family peptidase | DWX60_09795 | Not Available | Negative | 2420176 - 2421924 | 64897.7 |
| cmp deaminase | DWX60_09800 | Not Available | Negative | 2421939 - 2422373 | 16211.4 |
| duf4847 domain-containing protein | DWX60_09805 | Not Available | Negative | 2422378 - 2422872 | 18544.7 |
| m3 family peptidase | DWX60_09810 | Not Available | Negative | 2422886 - 2424928 | 77764.2 |
| crp/fnr family transcriptional regulator | DWX60_09815 | Not Available | Negative | 2425086 - 2425763 | 26004.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

