Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol-3-phosphate synthase | DWX60_09720 | Not Available | Positive | 2409598 - 2410905 | 48823.8 |
| sigma-54-dependent fis family transcriptional regulator | DWX60_09725 | Not Available | Positive | 2411072 - 2412337 | 46861.1 |
| hypothetical protein | DWX60_09730 | Not Available | Positive | 2412324 - 2412851 | 19738.6 |
| tetratricopeptide repeat protein | DWX60_09735 | Not Available | Positive | 2412868 - 2413620 | 29518.3 |
| preprotein translocase subunit secg | DWX60_09740 | Not Available | Positive | 2413626 - 2413991 | 12571.2 |
| exodeoxyribonuclease iii | DWX60_09745 | Not Available | Positive | 2414155 - 2414910 | 29696.0 |
| hypothetical protein | DWX60_09750 | Not Available | Positive | 2415065 - 2415358 | 11393.0 |
| pirin family protein | DWX60_09755 | Not Available | Negative | 2415581 - 2416285 | 26544.4 |
| Trna-gly | Not Available | Not Available | Positive | 2416422 - 2416497 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 2416531 - 2416613 | Not Available |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

