Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DWX60_09670 | Not Available | Positive | 2399734 - 2400783 | 39554.0 |
| duf4837 family protein | DWX60_09675 | Not Available | Positive | 2400809 - 2401873 | 40606.1 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DWX60_09680 | Not Available | Positive | 2401900 - 2403000 | 40647.4 |
| ndp-sugar synthase | DWX60_09685 | Not Available | Positive | 2403042 - 2403752 | 26297.6 |
| hypothetical protein | DWX60_09690 | Not Available | Positive | 2403772 - 2404623 | 31795.0 |
| cdp-alcohol phosphatidyltransferase family protein | DWX60_09695 | Not Available | Positive | 2404631 - 2405581 | 37209.4 |
| upf0104 family protein | DWX60_09700 | Not Available | Positive | 2405578 - 2406579 | 37585.2 |
| had family hydrolase | DWX60_09705 | Not Available | Positive | 2406584 - 2407306 | 27108.7 |
| sugar mfs transporter | DWX60_09710 | Not Available | Positive | 2407313 - 2408512 | 44345.3 |
| ribokinase | DWX60_09715 | Not Available | Negative | 2408566 - 2409462 | 33171.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

