Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX60_09565 | Not Available | Negative | 2379565 - 2380011 | 17649.5 |
| hypothetical protein | DWX60_09570 | Not Available | Negative | 2380023 - 2380400 | 14668.4 |
| rna polymerase sigma factor | DWX60_09575 | Not Available | Negative | 2380445 - 2380996 | 21616.8 |
| ribonuclease z | DWX60_09580 | Not Available | Negative | 2381030 - 2381959 | 35262.8 |
| cold shock domain-containing protein | DWX60_09585 | Not Available | Negative | 2382030 - 2382476 | 17045.4 |
| 30s ribosomal protein s1 | DWX60_09590 | Not Available | Negative | 2382726 - 2384522 | 67091.1 |
| hybrid sensor histidine kinase/response regulator | DWX60_09595 | Not Available | Positive | 2384719 - 2386383 | 63101.4 |
| simpl domain-containing protein | DWX60_09600 | Not Available | Negative | 2386380 - 2387081 | 26268.6 |
| n-acetylmuramic acid 6-phosphate etherase | DWX60_09605 | Not Available | Negative | 2387085 - 2387921 | 30377.9 |
| atpase | DWX60_09610 | Not Available | Negative | 2387918 - 2388757 | 30756.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

