Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase/3-hydroxyacyl-acp dehydratase | DWX60_09510 | Not Available | Positive | 2365516 - 2366901 | 51127.1 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DWX60_09515 | Not Available | Positive | 2366918 - 2367685 | 27740.6 |
| hypothetical protein | DWX60_09520 | Not Available | Positive | 2367748 - 2368311 | 21611.7 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | DWX60_09525 | Not Available | Positive | 2368363 - 2369265 | 35070.2 |
| alpha-l-fucosidase | DWX60_09530 | Not Available | Positive | 2369274 - 2371313 | 76825.5 |
| hypothetical protein | DWX60_09535 | Not Available | Negative | 2371491 - 2372264 | 29758.4 |
| tlpa family protein disulfide reductase | DWX60_09540 | Not Available | Negative | 2372386 - 2374494 | 80347.9 |
| thiol:disulfide interchange protein | DWX60_09545 | Not Available | Negative | 2374516 - 2375706 | 44870.9 |
| hypothetical protein | DWX60_09550 | Not Available | Negative | 2375737 - 2377080 | 51763.6 |
| blai/meci/copy family transcriptional regulator | DWX60_09560 | Not Available | Negative | 2379012 - 2379374 | 14012.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

