Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| comec family competence protein | DWX60_09250 | Not Available | Negative | 2297112 - 2299031 | 72551.4 |
| ribulose-phosphate 3-epimerase | DWX60_09255 | Not Available | Negative | 2299078 - 2299731 | 23913.3 |
| porin family protein | DWX60_09260 | Not Available | Negative | 2299807 - 2301102 | 48124.7 |
| sigma-70 family rna polymerase sigma factor | DWX60_09265 | Not Available | Negative | 2301105 - 2301647 | 20885.1 |
| hypothetical protein | DWX60_09270 | Not Available | Positive | 2301805 - 2302587 | 28981.6 |
| methionyl-trna formyltransferase | DWX60_09275 | Not Available | Negative | 2302660 - 2303634 | 36639.5 |
| cbs domain-containing protein | DWX60_09280 | Not Available | Negative | 2303648 - 2305441 | 66679.6 |
| threonylcarbamoyl-amp synthase | DWX60_09285 | Not Available | Negative | 2305459 - 2306034 | 21163.3 |
| n-acetylglucosamine-6-phosphate deacetylase | DWX60_09290 | Not Available | Negative | 2306201 - 2307364 | 42248.9 |
| acrb/acrd/acrf family protein | DWX60_09295 | Not Available | Negative | 2307454 - 2310630 | 121034.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

