Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWX60_09150 | Not Available | Positive | 2268297 - 2269289 | 37662.1 |
| hypothetical protein | DWX60_09155 | Not Available | Positive | 2269360 - 2269809 | 17021.0 |
| hypothetical protein | DWX60_09160 | Not Available | Negative | 2269883 - 2270260 | 14874.8 |
| sigma-70 family rna polymerase sigma factor | DWX60_09165 | Not Available | Negative | 2270257 - 2270802 | 21012.2 |
| hypothetical protein | DWX60_09170 | Not Available | Positive | 2270947 - 2271387 | 16110.3 |
| valine--trna ligase | DWX60_09175 | Not Available | Negative | 2271568 - 2274195 | 99787.7 |
| nucleoside triphosphate pyrophosphohydrolase | DWX60_09180 | Not Available | Positive | 2274303 - 2275091 | 30701.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_09185 | Not Available | Negative | 2275285 - 2277015 | 65676.6 |
| tonb-dependent receptor | DWX60_09190 | Not Available | Negative | 2277039 - 2280200 | 117902.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_09195 | Not Available | Negative | 2280614 - 2282548 | 71558.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

