Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tpm domain-containing protein | DWX60_09000 | Not Available | Negative | 2229072 - 2229992 | 33387.1 |
| alpha/beta hydrolase | DWX60_09005 | Not Available | Negative | 2229989 - 2230939 | 36526.2 |
| shikimate dehydrogenase | DWX60_09010 | Not Available | Negative | 2230947 - 2231687 | 27746.7 |
| demethylmenaquinone methyltransferase | DWX60_09015 | Not Available | Negative | 2231706 - 2232443 | 27936.8 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DWX60_09020 | Not Available | Negative | 2232536 - 2233480 | 35930.2 |
| phoh family protein | DWX60_09025 | Not Available | Negative | 2233501 - 2234505 | 37699.4 |
| hypothetical protein | DWX60_09030 | Not Available | Positive | 2234663 - 2235337 | 24792.2 |
| trna pseudouridine(38-40) synthase trua | DWX60_09035 | Not Available | Positive | 2235342 - 2236145 | 30885.8 |
| dna metabolism protein | DWX60_09040 | Not Available | Negative | 2236111 - 2236878 | 30594.9 |
| putative dna modification/repair radical sam protein | DWX60_09045 | Not Available | Negative | 2236875 - 2238143 | 48564.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

