Phocaeicola vulgatus strain AF20-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF20-10 is a Gram-positive, anaerobic bacterium characterized by its rod shape and single-cell arrangement. This strain is mesophilic, indicating it thrives in moderate temperature ranges. It is non-motile, despite having flagella, which are typically associated with mobility in bacteria. Phocaeicola vulgatus is free-living and has been identified in association with Homo sapiens, suggesting a potential role in the human microbiome. The bacterium possesses a unique cellular structure, featuring two membranes and a single replicon, which may influence its adaptability and survival in various environments. The presence of two membranes is typical for Gram-positive organisms, which could play a part in its interactions with the host and its surrounding environment. This strain's habitat is specifically host-associated, highlighting its ecological role within the human body. The relationship between P. vulgatus and its human hosts could provide insights into the complex dynamics of the gut microbiota, where such bacteria may contribute to metabolic processes or immune responses. Understanding the characteristics and behaviors of Phocaeicola vulgatus strain AF20-10 could be pivotal in exploring its potential implications in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF20-10

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF20-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF20-10 AF20-10.Scaf135, whole genome

Gene Summary

Adenine Count

1430907 bp

Thymine Count

1387512 bp

Guanine Count

978085 bp

Cytosine Count

1055327 bp

Genome Length

4853285 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
argininosuccinate synthaseDWX60_08480Not AvailableNegative2108987 - 211019545126.7
n-acetyltransferaseDWX60_08485Not AvailableNegative2110296 - 211085320661.0
arginine repressorDWX60_08490Not AvailableNegative2110876 - 211135217529.3
rhamnulokinaseDWX60_08495Not AvailablePositive2111659 - 211313755022.8
l-rhamnose isomeraseDWX60_08500Not AvailablePositive2113177 - 211443347536.4
l-rhamnose/proton symporter rhatDWX60_08505Not AvailablePositive2114526 - 211554536101.1
rhamnulose-1-phosphate aldolaseDWX60_08510Not AvailablePositive2115631 - 211644030253.7
duf4251 domain-containing proteinDWX60_08515Not AvailablePositive2116649 - 211714618510.1
right-handed parallel beta-helix repeat-containing proteinDWX60_08520Not AvailableNegative2117253 - 211876755932.2
ragb/susd family nutrient uptake outer membrane proteinDWX60_08525Not AvailableNegative2118936 - 212055559890.2

Displaying genes 1641 – 1650 of 3918 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.