Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate synthase | DWX60_08480 | Not Available | Negative | 2108987 - 2110195 | 45126.7 |
| n-acetyltransferase | DWX60_08485 | Not Available | Negative | 2110296 - 2110853 | 20661.0 |
| arginine repressor | DWX60_08490 | Not Available | Negative | 2110876 - 2111352 | 17529.3 |
| rhamnulokinase | DWX60_08495 | Not Available | Positive | 2111659 - 2113137 | 55022.8 |
| l-rhamnose isomerase | DWX60_08500 | Not Available | Positive | 2113177 - 2114433 | 47536.4 |
| l-rhamnose/proton symporter rhat | DWX60_08505 | Not Available | Positive | 2114526 - 2115545 | 36101.1 |
| rhamnulose-1-phosphate aldolase | DWX60_08510 | Not Available | Positive | 2115631 - 2116440 | 30253.7 |
| duf4251 domain-containing protein | DWX60_08515 | Not Available | Positive | 2116649 - 2117146 | 18510.1 |
| right-handed parallel beta-helix repeat-containing protein | DWX60_08520 | Not Available | Negative | 2117253 - 2118767 | 55932.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_08525 | Not Available | Negative | 2118936 - 2120555 | 59890.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

