Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosidase | DWX60_08430 | Not Available | Negative | 2094052 - 2095230 | 44128.3 |
| aryl-sulfate sulfotransferase | DWX60_08435 | Not Available | Negative | 2095344 - 2097143 | 68354.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_08440 | Not Available | Negative | 2097345 - 2099111 | 67709.4 |
| tonb-dependent receptor | DWX60_08445 | Not Available | Negative | 2099138 - 2102167 | 110542.0 |
| glycoside hydrolase | DWX60_08450 | Not Available | Negative | 2102998 - 2104512 | 55591.4 |
| hypothetical protein | DWX60_08455 | Not Available | Positive | 2104622 - 2104852 | 9089.74 |
| arac family transcriptional regulator | DWX60_08460 | Not Available | Negative | 2104845 - 2105735 | 34355.3 |
| pyrroline-5-carboxylate reductase | DWX60_08465 | Not Available | Negative | 2105918 - 2106691 | 27247.4 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DWX60_08470 | Not Available | Negative | 2106875 - 2107999 | 40936.8 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DWX60_08475 | Not Available | Negative | 2108013 - 2108981 | 36014.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

