Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter atp-binding protein | DWX60_00760 | Not Available | Negative | 205898 - 206665 | 28695.6 |
| zinc abc transporter substrate-binding protein | DWX60_00765 | Not Available | Negative | 206675 - 207580 | 33993.4 |
| arac family transcriptional regulator | DWX60_00770 | Not Available | Positive | 208255 - 208752 | 19135.2 |
| sam-dependent methyltransferase | DWX60_00780 | Not Available | Negative | 212215 - 212898 | 26033.9 |
| deda family protein | DWX60_00785 | Not Available | Negative | 212903 - 213370 | 17015.3 |
| hypothetical protein | DWX60_00790 | Not Available | Negative | 213346 - 214281 | 35910.8 |
| phosphoribosylamine--glycine ligase | DWX60_00795 | Not Available | Negative | 214300 - 215568 | 45595.0 |
| s9 family peptidase | DWX60_00800 | Not Available | Negative | 215584 - 217797 | 83577.3 |
| rna methyltransferase | DWX60_00805 | Not Available | Negative | 217804 - 219252 | 56204.3 |
| type ii toxin-antitoxin system hicb family antitoxin | DWX60_00810 | Not Available | Negative | 219764 - 219955 | 7388.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

