Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transferase | DWX60_08160 | Not Available | Negative | 2026595 - 2027770 | 44978.8 |
| response regulator | DWX60_08165 | Not Available | Negative | 2027777 - 2028142 | 14101.4 |
| nudix hydrolase | DWX60_08170 | Not Available | Positive | 2028498 - 2029232 | 28586.5 |
| carbohydrate kinase | DWX60_08175 | Not Available | Positive | 2029404 - 2030897 | 53461.6 |
| xylose isomerase | DWX60_08180 | Not Available | Positive | 2030990 - 2032306 | 49096.9 |
| capsule biosynthesis protein | DWX60_08185 | Not Available | Positive | 2032546 - 2035038 | 92296.4 |
| chain-length determining protein | DWX60_08190 | Not Available | Positive | 2035046 - 2036185 | 41468.8 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DWX60_08195 | Not Available | Negative | 2036362 - 2036931 | 21738.7 |
| glucose-1-phosphate thymidylyltransferase | DWX60_08200 | Not Available | Negative | 2036931 - 2037818 | 32737.7 |
| undecaprenyl-phosphate glucose phosphotransferase | DWX60_08205 | Not Available | Negative | 2037854 - 2039257 | 54181.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

