Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | DWX60_08010 | Not Available | Positive | 1994560 - 1995498 | 35475.6 |
| hybrid sensor histidine kinase/response regulator | DWX60_08015 | Not Available | Positive | 1995508 - 1996647 | 42228.6 |
| endonuclease | DWX60_08020 | Not Available | Negative | 1996652 - 1997713 | 40748.7 |
| hybrid sensor histidine kinase/response regulator | DWX60_08025 | Not Available | Negative | 1997717 - 1999567 | 71115.3 |
| response regulator | DWX60_08030 | Not Available | Positive | 1999711 - 2000067 | 13457.5 |
| glycosyltransferase family 2 protein | DWX60_08035 | Not Available | Negative | 2000071 - 2001276 | 46152.1 |
| glycosyltransferase family 1 protein | DWX60_08040 | Not Available | Negative | 2001273 - 2002391 | 42719.0 |
| glycosyltransferase family 2 protein | DWX60_08045 | Not Available | Negative | 2002398 - 2003240 | 32126.5 |
| sam-dependent methyltransferase | DWX60_08050 | Not Available | Negative | 2003224 - 2004006 | 31189.3 |
| glycosyltransferase family 4 protein | DWX60_08055 | Not Available | Negative | 2004003 - 2005202 | 46006.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

