Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminopimelate epimerase | DWX60_07910 | Not Available | Positive | 1967380 - 1968222 | 30322.7 |
| ll-diaminopimelate aminotransferase | DWX60_07915 | Not Available | Positive | 1968269 - 1969498 | 45862.9 |
| hypothetical protein | DWX60_07920 | Not Available | Positive | 1969614 - 1970339 | 25693.8 |
| p-ii family nitrogen regulator | DWX60_07925 | Not Available | Positive | 1970457 - 1970813 | 13455.3 |
| ammonium transporter | DWX60_07930 | Not Available | Positive | 1970889 - 1972247 | 47778.7 |
| glutamine synthetase type iii | DWX60_07935 | Not Available | Positive | 1972305 - 1974494 | 82006.6 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DWX60_07940 | Not Available | Positive | 1974808 - 1976652 | 67628.3 |
| amidophosphoribosyltransferase | DWX60_07945 | Not Available | Positive | 1976811 - 1978694 | 71341.8 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DWX60_07950 | Not Available | Positive | 1978720 - 1979796 | 40038.6 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DWX60_07955 | Not Available | Positive | 1979820 - 1983047 | 119763.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

