Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DWX60_07755 | Not Available | Positive | 1929450 - 1932338 | 108897.0 |
| exopolygalacturonase | DWX60_07760 | Not Available | Positive | 1932373 - 1933677 | 49156.8 |
| duf4858 domain-containing protein | DWX60_07765 | Not Available | Negative | 1933829 - 1934392 | 21541.2 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DWX60_07770 | Not Available | Negative | 1934482 - 1936947 | 92786.0 |
| gscfa domain protein | DWX60_07775 | Not Available | Negative | 1936923 - 1937909 | 38542.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DWX60_07780 | Not Available | Positive | 1938002 - 1939900 | 70238.9 |
| trk system potassium transporter trka | DWX60_07785 | Not Available | Positive | 1939913 - 1941253 | 49307.5 |
| trkh family potassium uptake protein | DWX60_07790 | Not Available | Positive | 1941253 - 1942707 | 53451.2 |
| hypothetical protein | DWX60_07795 | Not Available | Positive | 1942810 - 1943187 | 14644.8 |
| nadh-quinone oxidoreductase subunit a | DWX60_07800 | Not Available | Positive | 1943291 - 1943641 | 13099.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

