Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DWX60_07700 | Not Available | Positive | 1914006 - 1914686 | 25970.1 |
| rna polymerase sigma-70 factor | DWX60_07705 | Not Available | Negative | 1914879 - 1915445 | 22251.9 |
| fecr family protein | DWX60_07710 | Not Available | Positive | 1915589 - 1916602 | 38548.0 |
| susc/raga family tonb-linked outer membrane protein | DWX60_07715 | Not Available | Positive | 1916856 - 1920242 | 126536.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_07720 | Not Available | Positive | 1920257 - 1922059 | 69788.8 |
| duf229 domain-containing protein | DWX60_07725 | Not Available | Positive | 1922100 - 1923497 | 53462.7 |
| dde transposase | DWX60_07730 | Not Available | Negative | 1923752 - 1924021 | 10175.5 |
| fic family protein | DWX60_07740 | Not Available | Positive | 1925289 - 1926290 | 38146.0 |
| hypothetical protein | DWX60_07745 | Not Available | Negative | 1926481 - 1927176 | 26655.1 |
| glycoside hydrolase family 28 protein | DWX60_07750 | Not Available | Positive | 1927389 - 1929173 | 66059.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

