Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| orf6n domain-containing protein | DWX60_00710 | Not Available | Positive | 193952 - 194512 | 21549.0 |
| hypothetical protein | DWX60_00715 | Not Available | Positive | 194588 - 194998 | 15494.5 |
| hypothetical protein | DWX60_00720 | Not Available | Positive | 195002 - 195415 | 15716.4 |
| dihydrolipoyl dehydrogenase | DWX60_00725 | Not Available | Positive | 195431 - 196771 | 47674.8 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DWX60_00730 | Not Available | Positive | 196771 - 198171 | 52348.7 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWX60_00735 | Not Available | Positive | 198342 - 199184 | 31850.9 |
| gluconate 5-dehydrogenase | DWX60_00740 | Not Available | Positive | 199221 - 200024 | 28589.6 |
| duf4861 domain-containing protein | DWX60_00745 | Not Available | Positive | 200121 - 201293 | 42916.6 |
| polysaccharide deacetylase family protein | DWX60_00750 | Not Available | Negative | 201351 - 201962 | 24627.9 |
| duf2723 domain-containing protein | DWX60_00755 | Not Available | Negative | 202033 - 205437 | 129139.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

