Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWX60_07645 | Not Available | Positive | 1897550 - 1898506 | 35966.2 |
| mfs transporter | DWX60_07650 | Not Available | Positive | 1898726 - 1900201 | 54265.1 |
| dna helicase | DWX60_07655 | Not Available | Negative | 1900255 - 1903581 | 128288.0 |
| hypothetical protein | DWX60_07660 | Not Available | Negative | 1903603 - 1904343 | 28001.5 |
| duf4038 domain-containing protein | DWX60_07665 | Not Available | Negative | 1904440 - 1905903 | 55542.8 |
| arabinosidase | DWX60_07670 | Not Available | Negative | 1905973 - 1906977 | 38217.7 |
| aldehyde dehydrogenase | DWX60_07675 | Not Available | Negative | 1907163 - 1908599 | 52538.3 |
| helix-turn-helix domain-containing protein | DWX60_07680 | Not Available | Negative | 1908811 - 1911600 | 106199.0 |
| hypothetical protein | DWX60_07685 | Not Available | Positive | 1911566 - 1911757 | 7513.78 |
| helicase | DWX60_07695 | Not Available | Negative | 1912280 - 1913677 | 53091.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

