Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase purh | DWX60_07540 | Not Available | Negative | 1856070 - 1857593 | 56236.2 |
| inorganic phosphate transporter | DWX60_07545 | Not Available | Positive | 1857874 - 1860126 | 83827.5 |
| aminoglycoside phosphotransferase | DWX60_07550 | Not Available | Positive | 1860234 - 1861316 | 41565.0 |
| s9 family peptidase | DWX60_07555 | Not Available | Negative | 1861402 - 1863843 | 94322.1 |
| hypothetical protein | DWX60_07560 | Not Available | Negative | 1863953 - 1864687 | 26991.3 |
| hybrid sensor histidine kinase/response regulator | DWX60_07565 | Not Available | Negative | 1864883 - 1869283 | 169071.0 |
| pectin esterase | DWX60_07570 | Not Available | Negative | 1869479 - 1871206 | 64103.6 |
| hypothetical protein | DWX60_07575 | Not Available | Negative | 1871213 - 1872373 | 43475.4 |
| pectate lyase | DWX60_07580 | Not Available | Negative | 1872394 - 1874007 | 61362.2 |
| cupin domain-containing protein | DWX60_07585 | Not Available | Positive | 1874196 - 1874687 | 18167.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

