Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 92 protein | DWX60_07180 | Not Available | Negative | 1793332 - 1795614 | 86555.5 |
| glycoside hydrolase family 92 protein | DWX60_07185 | Not Available | Negative | 1795649 - 1797865 | 83857.1 |
| hypothetical protein | DWX60_07190 | Not Available | Positive | 1798150 - 1801617 | 133248.0 |
| duf418 domain-containing protein | DWX60_07195 | Not Available | Negative | 1801766 - 1802947 | 45342.9 |
| atp-binding protein | DWX60_07205 | Not Available | Negative | 1803272 - 1804543 | 49393.9 |
| iron-containing alcohol dehydrogenase | DWX60_07210 | Not Available | Positive | 1804767 - 1805939 | 42892.9 |
| creatininase family protein | DWX60_07215 | Not Available | Positive | 1805939 - 1806694 | 28416.0 |
| tonb-dependent receptor | DWX60_07220 | Not Available | Positive | 1807343 - 1810684 | 123127.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_07225 | Not Available | Positive | 1810706 - 1812271 | 58966.7 |
| hypothetical protein | DWX60_07235 | Not Available | Positive | 1812690 - 1812962 | 9728.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

