Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 127 protein | DWX60_00660 | Not Available | Positive | 173499 - 175904 | 89713.0 |
| s9 family peptidase | DWX60_00665 | Not Available | Positive | 175916 - 178159 | 85718.8 |
| tonb-dependent receptor | DWX60_00670 | Not Available | Positive | 178689 - 182024 | 122693.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_00675 | Not Available | Positive | 182037 - 184076 | 76726.5 |
| hypothetical protein | DWX60_00680 | Not Available | Positive | 184096 - 186408 | 86455.1 |
| hypothetical protein | DWX60_00685 | Not Available | Negative | 186439 - 186693 | 10260.6 |
| pectate lyase | DWX60_00690 | Not Available | Positive | 186677 - 188818 | 81702.4 |
| duf1593 domain-containing protein | DWX60_00695 | Not Available | Positive | 188835 - 190190 | 51251.5 |
| aaa family atpase | DWX60_00700 | Not Available | Negative | 190239 - 191966 | 67951.9 |
| l-aspartate oxidase | DWX60_00705 | Not Available | Negative | 192216 - 193796 | 58967.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

