Phocaeicola vulgatus strain AF20-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF20-10 is a Gram-positive, anaerobic bacterium characterized by its rod shape and single-cell arrangement. This strain is mesophilic, indicating it thrives in moderate temperature ranges. It is non-motile, despite having flagella, which are typically associated with mobility in bacteria. Phocaeicola vulgatus is free-living and has been identified in association with Homo sapiens, suggesting a potential role in the human microbiome. The bacterium possesses a unique cellular structure, featuring two membranes and a single replicon, which may influence its adaptability and survival in various environments. The presence of two membranes is typical for Gram-positive organisms, which could play a part in its interactions with the host and its surrounding environment. This strain's habitat is specifically host-associated, highlighting its ecological role within the human body. The relationship between P. vulgatus and its human hosts could provide insights into the complex dynamics of the gut microbiota, where such bacteria may contribute to metabolic processes or immune responses. Understanding the characteristics and behaviors of Phocaeicola vulgatus strain AF20-10 could be pivotal in exploring its potential implications in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF20-10

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF20-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF20-10 AF20-10.Scaf135, whole genome

Gene Summary

Adenine Count

1430907 bp

Thymine Count

1387512 bp

Guanine Count

978085 bp

Cytosine Count

1055327 bp

Genome Length

4853285 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDWX60_07075Not AvailableNegative1745671 - 174711353782.6
susc/raga family tonb-linked outer membrane proteinDWX60_07080Not AvailableNegative1747144 - 1750440122238.0
duf4974 domain-containing proteinDWX60_07085Not AvailableNegative1750597 - 175159538257.9
rna polymerase sigma-70 factorDWX60_07090Not AvailableNegative1751656 - 175224623553.4
alpha-galactosidaseDWX60_07095Not AvailableNegative1753142 - 175529882570.4
arac family transcriptional regulatorDWX60_07100Not AvailablePositive1755486 - 175638234794.4
9-o-acetylesteraseDWX60_07105Not AvailableNegative1756395 - 175835072742.0
ragb/susd family nutrient uptake outer membrane proteinDWX60_07110Not AvailableNegative1758365 - 176031175196.5
tonb-dependent receptorDWX60_07115Not AvailableNegative1760340 - 1763477117341.0
beta-glucosidaseDWX60_07120Not AvailableNegative1763558 - 176583184184.0

Displaying genes 1371 – 1380 of 3918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.