Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWX60_07075 | Not Available | Negative | 1745671 - 1747113 | 53782.6 |
| susc/raga family tonb-linked outer membrane protein | DWX60_07080 | Not Available | Negative | 1747144 - 1750440 | 122238.0 |
| duf4974 domain-containing protein | DWX60_07085 | Not Available | Negative | 1750597 - 1751595 | 38257.9 |
| rna polymerase sigma-70 factor | DWX60_07090 | Not Available | Negative | 1751656 - 1752246 | 23553.4 |
| alpha-galactosidase | DWX60_07095 | Not Available | Negative | 1753142 - 1755298 | 82570.4 |
| arac family transcriptional regulator | DWX60_07100 | Not Available | Positive | 1755486 - 1756382 | 34794.4 |
| 9-o-acetylesterase | DWX60_07105 | Not Available | Negative | 1756395 - 1758350 | 72742.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_07110 | Not Available | Negative | 1758365 - 1760311 | 75196.5 |
| tonb-dependent receptor | DWX60_07115 | Not Available | Negative | 1760340 - 1763477 | 117341.0 |
| beta-glucosidase | DWX60_07120 | Not Available | Negative | 1763558 - 1765831 | 84184.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

