Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DWX60_06915 | Not Available | Negative | 1701334 - 1703268 | 72865.7 |
| duf4981 domain-containing protein | DWX60_06920 | Not Available | Negative | 1703286 - 1706462 | 121451.0 |
| lysine exporter lyso family protein | DWX60_06925 | Not Available | Negative | 1706476 - 1707078 | 21649.9 |
| duf340 domain-containing protein | DWX60_06930 | Not Available | Negative | 1707075 - 1707356 | 10217.2 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_06935 | Not Available | Negative | 1707471 - 1708988 | 57946.4 |
| tonb-dependent receptor | DWX60_06940 | Not Available | Negative | 1709009 - 1712137 | 116534.0 |
| tetratricopeptide repeat protein | DWX60_06945 | Not Available | Negative | 1712361 - 1713986 | 63080.8 |
| ribonuclease hii | DWX60_06950 | Not Available | Positive | 1714088 - 1714693 | 22930.4 |
| l-fucose:h+ symporter permease | DWX60_06955 | Not Available | Negative | 1714836 - 1716149 | 48465.5 |
| l-fucose isomerase | DWX60_06960 | Not Available | Negative | 1716261 - 1718036 | 65624.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

