Phocaeicola vulgatus strain AF20-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF20-10 is a Gram-positive, anaerobic bacterium characterized by its rod shape and single-cell arrangement. This strain is mesophilic, indicating it thrives in moderate temperature ranges. It is non-motile, despite having flagella, which are typically associated with mobility in bacteria. Phocaeicola vulgatus is free-living and has been identified in association with Homo sapiens, suggesting a potential role in the human microbiome. The bacterium possesses a unique cellular structure, featuring two membranes and a single replicon, which may influence its adaptability and survival in various environments. The presence of two membranes is typical for Gram-positive organisms, which could play a part in its interactions with the host and its surrounding environment. This strain's habitat is specifically host-associated, highlighting its ecological role within the human body. The relationship between P. vulgatus and its human hosts could provide insights into the complex dynamics of the gut microbiota, where such bacteria may contribute to metabolic processes or immune responses. Understanding the characteristics and behaviors of Phocaeicola vulgatus strain AF20-10 could be pivotal in exploring its potential implications in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF20-10

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF20-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF20-10 AF20-10.Scaf135, whole genome

Gene Summary

Adenine Count

1430907 bp

Thymine Count

1387512 bp

Guanine Count

978085 bp

Cytosine Count

1055327 bp

Genome Length

4853285 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycoside hydrolaseDWX60_06915Not AvailableNegative1701334 - 170326872865.7
duf4981 domain-containing proteinDWX60_06920Not AvailableNegative1703286 - 1706462121451.0
lysine exporter lyso family proteinDWX60_06925Not AvailableNegative1706476 - 170707821649.9
duf340 domain-containing proteinDWX60_06930Not AvailableNegative1707075 - 170735610217.2
ragb/susd family nutrient uptake outer membrane proteinDWX60_06935Not AvailableNegative1707471 - 170898857946.4
tonb-dependent receptorDWX60_06940Not AvailableNegative1709009 - 1712137116534.0
tetratricopeptide repeat proteinDWX60_06945Not AvailableNegative1712361 - 171398663080.8
ribonuclease hiiDWX60_06950Not AvailablePositive1714088 - 171469322930.4
l-fucose:h+ symporter permeaseDWX60_06955Not AvailableNegative1714836 - 171614948465.5
l-fucose isomeraseDWX60_06960Not AvailableNegative1716261 - 171803665624.0

Displaying genes 1341 – 1350 of 3918 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.