Phocaeicola vulgatus strain AF20-10

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF20-10 is a Gram-positive, anaerobic bacterium characterized by its rod shape and single-cell arrangement. This strain is mesophilic, indicating it thrives in moderate temperature ranges. It is non-motile, despite having flagella, which are typically associated with mobility in bacteria. Phocaeicola vulgatus is free-living and has been identified in association with Homo sapiens, suggesting a potential role in the human microbiome. The bacterium possesses a unique cellular structure, featuring two membranes and a single replicon, which may influence its adaptability and survival in various environments. The presence of two membranes is typical for Gram-positive organisms, which could play a part in its interactions with the host and its surrounding environment. This strain's habitat is specifically host-associated, highlighting its ecological role within the human body. The relationship between P. vulgatus and its human hosts could provide insights into the complex dynamics of the gut microbiota, where such bacteria may contribute to metabolic processes or immune responses. Understanding the characteristics and behaviors of Phocaeicola vulgatus strain AF20-10 could be pivotal in exploring its potential implications in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF20-10

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF20-10
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF20-10 AF20-10.Scaf135, whole genome

Gene Summary

Adenine Count

1430907 bp

Thymine Count

1387512 bp

Guanine Count

978085 bp

Cytosine Count

1055327 bp

Genome Length

4853285 bp

Protein-coding Genes

3848 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-hairpin-helix domain-containing proteinDWX60_00560Not AvailablePositive135407 - 13747981258.1
radical sam proteinDWX60_00565Not AvailablePositive137525 - 13830129335.2
hypothetical proteinDWX60_00570Not AvailablePositive138834 - 1390226688.22
stas domain-containing proteinDWX60_00575Not AvailableNegative139212 - 14089460574.7
duf4884 domain-containing proteinDWX60_00580Not AvailableNegative140993 - 14126210192.1
rubrerythrin family proteinDWX60_00585Not AvailablePositive141443 - 14202121639.4
hybrid sensor histidine kinase/response regulatorDWX60_00590Not AvailableNegative142115 - 146101150567.0
hypothetical proteinDWX60_00595Not AvailableNegative146242 - 149598126618.0
ragb/susd family nutrient uptake outer membrane proteinDWX60_00600Not AvailableNegative149738 - 15135761287.8
tonb-dependent receptorDWX60_00605Not AvailableNegative151384 - 154428114093.0

Displaying genes 111 – 120 of 3918 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.