Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | DWX60_00560 | Not Available | Positive | 135407 - 137479 | 81258.1 |
| radical sam protein | DWX60_00565 | Not Available | Positive | 137525 - 138301 | 29335.2 |
| hypothetical protein | DWX60_00570 | Not Available | Positive | 138834 - 139022 | 6688.22 |
| stas domain-containing protein | DWX60_00575 | Not Available | Negative | 139212 - 140894 | 60574.7 |
| duf4884 domain-containing protein | DWX60_00580 | Not Available | Negative | 140993 - 141262 | 10192.1 |
| rubrerythrin family protein | DWX60_00585 | Not Available | Positive | 141443 - 142021 | 21639.4 |
| hybrid sensor histidine kinase/response regulator | DWX60_00590 | Not Available | Negative | 142115 - 146101 | 150567.0 |
| hypothetical protein | DWX60_00595 | Not Available | Negative | 146242 - 149598 | 126618.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWX60_00600 | Not Available | Negative | 149738 - 151357 | 61287.8 |
| tonb-dependent receptor | DWX60_00605 | Not Available | Negative | 151384 - 154428 | 114093.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

