Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pqqd family protein | DWX60_06070 | Not Available | Negative | 1514294 - 1514563 | 10032.2 |
| cell surface protein | DWX60_06075 | Not Available | Negative | 1514676 - 1517510 | 98161.1 |
| hypothetical protein | DWX60_06080 | Not Available | Positive | 1518514 - 1518717 | 7912.68 |
| restriction endonuclease subunit s | DWX60_06085 | Not Available | Positive | 1519457 - 1520719 | 47188.1 |
| integrase | DWX60_06095 | Not Available | Positive | 1521196 - 1521999 | 31455.2 |
| duf1016 domain-containing protein | DWX60_06105 | Not Available | Negative | 1523583 - 1524713 | 44049.9 |
| sam-dependent dna methyltransferase | DWX60_06110 | Not Available | Negative | 1524717 - 1526135 | 53156.6 |
| dead/deah box helicase | DWX60_06115 | Not Available | Negative | 1526140 - 1528842 | 102533.0 |
| duf262 domain-containing protein | DWX60_06120 | Not Available | Negative | 1528909 - 1530648 | 68066.4 |
| xre family transcriptional regulator | DWX60_06125 | Not Available | Negative | 1530716 - 1530919 | 7754.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

