Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate-alanine antiporter | DWX60_05870 | Not Available | Positive | 1458133 - 1459833 | 61139.6 |
| bifunctional aspartate transaminase/aspartate 4-decarboxylase | DWX60_05875 | Not Available | Positive | 1459853 - 1461493 | 62643.3 |
| peptidase s41 | DWX60_05880 | Not Available | Positive | 1461642 - 1463039 | 52213.7 |
| copper homeostasis protein | DWX60_05885 | Not Available | Positive | 1463196 - 1463684 | 17145.3 |
| duf4136 domain-containing protein | DWX60_05890 | Not Available | Positive | 1463808 - 1464446 | 24032.2 |
| porin family protein | DWX60_05895 | Not Available | Positive | 1464488 - 1465114 | 23479.7 |
| polyprenol monophosphomannose synthase | DWX60_05900 | Not Available | Positive | 1465267 - 1466016 | 28446.6 |
| dihydroorotase | DWX60_05905 | Not Available | Positive | 1466013 - 1467353 | 49590.4 |
| 5-methyltetrahydrofolate--homocysteine methyltransferase | DWX60_05910 | Not Available | Positive | 1467350 - 1468237 | 33492.9 |
| metallophosphoesterase | DWX60_05915 | Not Available | Positive | 1468252 - 1469412 | 43681.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

