Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 25 protein | DWX60_05770 | Not Available | Negative | 1429635 - 1430501 | 33910.9 |
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DWX60_05775 | Not Available | Negative | 1430627 - 1432270 | 59935.1 |
| hypothetical protein | DWX60_05780 | Not Available | Positive | 1432421 - 1432669 | 9206.38 |
| acyltransferase | DWX60_05785 | Not Available | Positive | 1432680 - 1433237 | 21350.4 |
| alpha-1,3-galactosidase b | DWX60_05790 | Not Available | Negative | 1433320 - 1435137 | 68988.8 |
| xanthan lyase | DWX60_05795 | Not Available | Positive | 1435220 - 1438090 | 106950.0 |
| hypothetical protein | DWX60_05800 | Not Available | Positive | 1438181 - 1438498 | 12244.6 |
| ygiq family radical sam protein | DWX60_05805 | Not Available | Positive | 1438550 - 1440439 | 72325.2 |
| sodium-translocating pyrophosphatase | DWX60_05810 | Not Available | Positive | 1440698 - 1442902 | 77024.7 |
| amino acid-binding protein | DWX60_05815 | Not Available | Negative | 1443023 - 1443439 | 15370.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

