Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine abc transporter substrate-binding protein | DWX60_05715 | Not Available | Positive | 1418061 - 1418879 | 30961.2 |
| gfo/idh/moca family oxidoreductase | DWX60_05720 | Not Available | Positive | 1418968 - 1419957 | 36847.1 |
| duf4421 domain-containing protein | DWX60_05725 | Not Available | Positive | 1419967 - 1421094 | 43092.1 |
| hypothetical protein | DWX60_05730 | Not Available | Negative | 1421167 - 1422738 | 58554.9 |
| hypothetical protein | DWX60_05735 | Not Available | Negative | 1422782 - 1424182 | 52378.5 |
| dna-binding protein | DWX60_05740 | Not Available | Negative | 1424535 - 1425158 | 23854.8 |
| helicase | DWX60_05750 | Not Available | Positive | 1425563 - 1427653 | 81461.2 |
| thioredoxin | DWX60_05755 | Not Available | Positive | 1427884 - 1428144 | 10400.5 |
| 50s ribosomal protein l11 methyltransferase | DWX60_05760 | Not Available | Positive | 1428155 - 1429000 | 31686.8 |
| yccf domain-containing protein | DWX60_05765 | Not Available | Negative | 1429221 - 1429589 | 13206.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

