Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose 5-phosphate isomerase b | DWX60_05665 | Not Available | Positive | 1410700 - 1411134 | 15944.1 |
| duf4468 domain-containing protein | DWX60_05670 | Not Available | Positive | 1411241 - 1412338 | 40450.4 |
| tetratricopeptide repeat protein | DWX60_05675 | Not Available | Positive | 1412703 - 1412999 | 11531.6 |
| 4fe-4s dicluster domain-containing protein | DWX60_05680 | Not Available | Positive | 1413010 - 1413240 | 8117.04 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DWX60_05685 | Not Available | Positive | 1413252 - 1414334 | 39202.6 |
| hypothetical protein | DWX60_05690 | Not Available | Positive | 1414341 - 1414508 | 6434.4 |
| 2-oxoglutarate oxidoreductase | DWX60_05695 | Not Available | Positive | 1414527 - 1415291 | 27882.8 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DWX60_05700 | Not Available | Positive | 1415305 - 1415847 | 19888.6 |
| hypothetical protein | DWX60_05705 | Not Available | Negative | 1415841 - 1416029 | 7558.39 |
| hypothetical protein | DWX60_05710 | Not Available | Positive | 1415941 - 1418052 | 80786.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

