Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4982 domain-containing protein | DWX60_00510 | Not Available | Negative | 117674 - 120112 | 92971.0 |
| hybrid sensor histidine kinase/response regulator | DWX60_00515 | Not Available | Negative | 120252 - 124235 | 152753.0 |
| leucine--trna ligase | DWX60_00520 | Not Available | Positive | 124603 - 127437 | 108279.0 |
| yitt family protein | DWX60_00525 | Not Available | Positive | 127519 - 128415 | 33215.4 |
| n-acetyltransferase | DWX60_00530 | Not Available | Negative | 128514 - 129041 | 20715.6 |
| non-canonical purine ntp diphosphatase | DWX60_00535 | Not Available | Positive | 129201 - 129782 | 21352.7 |
| quinolinate synthase nada | DWX60_00540 | Not Available | Negative | 130037 - 131029 | 36608.0 |
| tonb-dependent receptor | DWX60_00545 | Not Available | Negative | 131131 - 133449 | 88745.1 |
| trmh family rna methyltransferase | DWX60_00550 | Not Available | Positive | 134171 - 134707 | 20012.2 |
| duf4294 domain-containing protein | DWX60_00555 | Not Available | Negative | 134738 - 135310 | 22062.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

