Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF20-10 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1430907 bp
Thymine Count
1387512 bp
Guanine Count
978085 bp
Cytosine Count
1055327 bp
Genome Length
4853285 bp
Protein-coding Genes
3848 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase family protein | DWX60_05310 | Not Available | Negative | 1335565 - 1336812 | 47528.7 |
| efflux rnd transporter periplasmic adaptor subunit | DWX60_05315 | Not Available | Negative | 1336816 - 1337889 | 39523.2 |
| abc transporter permease | DWX60_05320 | Not Available | Negative | 1337891 - 1339129 | 46309.0 |
| duf3244 domain-containing protein | DWX60_05325 | Not Available | Negative | 1339133 - 1339567 | 16352.8 |
| tetratricopeptide repeat protein | DWX60_05330 | Not Available | Negative | 1339753 - 1341516 | 68848.5 |
| dna helicase recq | DWX60_05335 | Not Available | Negative | 1341655 - 1343835 | 81679.6 |
| atp-dependent clp protease atp-binding subunit clpx | DWX60_05340 | Not Available | Negative | 1343993 - 1345243 | 46679.9 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DWX60_05345 | Not Available | Negative | 1345367 - 1346038 | 24864.8 |
| trigger factor | DWX60_05350 | Not Available | Negative | 1346219 - 1347574 | 51542.8 |
| rna-binding protein | DWX60_05355 | Not Available | Positive | 1347956 - 1348201 | 9049.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

