Dorea formicigenerans strain AF25-11

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Dorea

Description

Dorea formicigenerans strain AF25-11 is a Gram-positive anaerobic bacterium predominantly found in the gut of Homo sapiens. This strain is characterized by its ability to thrive in oxygen-free environments, which is typical for many gut microbiota. The presence of flagella suggests that Dorea formicigenerans can exhibit motility, potentially aiding its colonization and interaction within the gut ecosystem. Dorea formicigenerans strain AF25-11 is notable for having a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability in the complex gut environment. The accession number QRUK00000000.1 provides a reference for further genomic studies and sequence data related to this strain. Understanding the ecological role of Dorea formicigenerans in the human gut is crucial, as members of the Dorea genus are often involved in fermentation processes and the breakdown of complex carbohydrates. This metabolic activity can influence the microbial community structure and the overall health of the host. The ability of Dorea formicigenerans to survive and function in the anaerobic conditions of the gut underscores its potential significance in maintaining gut homeostasis and contributing to the host's metabolic profile.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusDorea
SpeciesDorea formicigenerans
Strainstrain AF25-11

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dorea formicigenerans strain AF25-11 AF25-11.Scaf102, whole genome

Gene Summary

Adenine Count

980208 bp

Thymine Count

977970 bp

Guanine Count

671148 bp

Cytosine Count

672805 bp

Genome Length

3302668 bp

Protein-coding Genes

3025 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate reductoisomeraseDWY33_08530Not AvailablePositive1778065 - 177920742162.5
rip metalloprotease rsepDWY33_08535Not AvailablePositive1779217 - 178024837762.3
gnat family n-acetyltransferaseDWY33_08540Not AvailablePositive1780340 - 178080118350.9
atpaseDWY33_08545Not AvailablePositive1780818 - 178199045278.8
peptidoglycan-binding proteinDWY33_08550Not AvailableNegative1782194 - 178345347205.6
hypothetical proteinDWY33_08555Not AvailablePositive1783539 - 178478648506.9
carbamoyl phosphate synthase small subunitDWY33_08560Not AvailablePositive1785083 - 178615339385.2
carbamoyl-phosphate synthase large subunitDWY33_08565Not AvailablePositive1786155 - 1789388118558.0
shikimate dehydrogenaseDWY33_08570Not AvailablePositive1789696 - 179057131853.7
dna-binding response regulatorDWY33_08575Not AvailablePositive1790721 - 179139225631.1

Displaying genes 1681 – 1690 of 3114 in total

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.