Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3805 domain-containing protein | DWY53_04560 | Not Available | Positive | 1170474 - 1171307 | 31633.2 |
| abc transporter atp-binding protein | DWY53_04565 | Not Available | Positive | 1171315 - 1173180 | 72122.0 |
| site-specific integrase | DWY53_04570 | Not Available | Positive | 1173264 - 1174466 | 46765.8 |
| transcriptional regulator | DWY53_04575 | Not Available | Positive | 1175085 - 1175918 | 32255.6 |
| hypothetical protein | DWY53_04580 | Not Available | Positive | 1176127 - 1176567 | 17459.8 |
| udp-n-acetylglucosamine 2-epimerase (non-hydrolyzing) | DWY53_04585 | Not Available | Positive | 1177076 - 1178224 | 42792.1 |
| lipopolysaccharide biosynthesis protein | DWY53_04590 | Not Available | Positive | 1178275 - 1179810 | 57566.5 |
| (4fe-4s)-binding protein | DWY53_04595 | Not Available | Positive | 1179807 - 1180961 | 44781.9 |
| polysaccharide pyruvyl transferase family protein | DWY53_04600 | Not Available | Positive | 1180958 - 1182151 | 46831.8 |
| hypothetical protein | DWY53_04605 | Not Available | Positive | 1182155 - 1183156 | 39033.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

