Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF25-30LB |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1558347 bp
Thymine Count
1558364 bp
Guanine Count
1138401 bp
Cytosine Count
1152170 bp
Genome Length
5408603 bp
Protein-coding Genes
4536 genes
Non-Coding Genes
107 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3826 domain-containing protein | DWY53_04450 | Not Available | Positive | 1136697 - 1137365 | 25071.4 |
| polysaccharide lyase | DWY53_04455 | Not Available | Positive | 1137565 - 1139247 | 61325.8 |
| pectate lyase | DWY53_04460 | Not Available | Positive | 1139249 - 1142335 | 115942.0 |
| sigma-70 family rna polymerase sigma factor | DWY53_04465 | Not Available | Positive | 1142522 - 1143076 | 21450.0 |
| hypothetical protein | DWY53_04470 | Not Available | Positive | 1143125 - 1143409 | 11159.2 |
| tonb-dependent receptor | DWY53_04475 | Not Available | Positive | 1143444 - 1146545 | 114008.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_04480 | Not Available | Positive | 1146569 - 1148365 | 68192.1 |
| ragb/susd family nutrient uptake outer membrane protein | DWY53_04490 | Not Available | Positive | 1152091 - 1153866 | 67489.8 |
| histidine-type phosphatase | DWY53_04495 | Not Available | Positive | 1153881 - 1155161 | 48948.6 |
| methylcobamide--com methyltransferase | DWY53_04500 | Not Available | Positive | 1155312 - 1156322 | 36514.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

